ABOUT THIS RECORDspecies: Ipomoea nil
miRNA family: MIR166
source: PMRD, original name: ini-miR166
Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTC miRNA* GGGATGTTGGCTGGCTCGATG mismatches: 6 bulges: 0 |
pre-miRNA
GGGGATGTTGGCTGGCTCGATGCACTTACTTATCATCTTCCTCAAAAACATGCGACATATACATACATATGGAAGATCATATATCTATAAATATATATTT
GTCTTCCATATCCCATATATATATGTTGATGATGGTGGAGTGATGGCATCGGACCAGGCTTCATTCCTC
dot-bracket secondary structure
(((((((..(.((((..((((((..((((((((((((...............(((((((((.(((.(((((((((((.((((((........))))))..
)))))))))))....))).)))))))))..)))))).))))))..))))))..)))).)..))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGGATGTTGGCTGGCTCGATGCACTTACTTATCATCTTCCTCAAAAACATGCGACATATACATACATATGGAAGATCATATATCTATAAATATATATTT
GTCTTCCATATCCCATATATATATGTTGATGATGGTGGAGTGATGGCATCGGACCAGGCTTCATTCCTC
dot-bracket secondary structure
(((((((..(.((((..((((((..((((((((((((...............(((((((((.(((.(((((((((((.((((((........))))))..
)))))))))))....))).)))))))))..)))))).))))))..))))))..)))).)..))))))).
SIMILARITIES| miRBase aqc-MIR166d: 0.00003 PMRD aqc-miR166d: 0.00003 microPC miR166: 0.000000002 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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