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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST048672
species: Ipomoea nil
miRNA family: MIR166
source: PMRD, original name: ini-miR166

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCTC

miRNA*
 GGGATGTTGGCTGGCTCGATG

mismatches: 6
bulges: 0
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pre-miRNA
 GGGGATGTTGGCTGGCTCGATGCACTTACTTATCATCTTCCTCAAAAACATGCGACATATACATACATATGGAAGATCATATATCTATAAATATATATTT
GTCTTCCATATCCCATATATATATGTTGATGATGGTGGAGTGATGGCATCGGACCAGGCTTCATTCCTC

dot-bracket secondary structure
(((((((..(.((((..((((((..((((((((((((...............(((((((((.(((.(((((((((((.((((((........))))))..
)))))))))))....))).)))))))))..)))))).))))))..))))))..)))).)..))))))).


SIMILARITIES
miRBase aqc-MIR166d: 0.00003

PMRD aqc-miR166d: 0.00003

microPC miR166: 0.000000002		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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