ABOUT THIS RECORDspecies: Nicotiana benthamiana
source: PMRD, original name: nbe-miR156b
Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCAC miRNA* GCTAGCTTCATTTCCTTTAAA mismatches: 6 bulges: 1 |
pre-miRNA
CTGCTAGCTTCATTTCCTTTAAACCGCAATGAAGGGCTTGAGAAGTGATTGGTAGGTGCACCATGGGAATCAGAAGGTTGAATGGTGTGTATCCCATCAA
TGTTAGCTCCAAGACTTGAGGGTGGATTCCTTGATCCCCAGGACCGATTTGACAGAAGAGAGAGAGCAC
dot-bracket secondary structure
.((((..(((..((((..(((((.((.......(((((.......((((.((...(..((((((...((((....))))..))))))..)..)).)))).
....))).))....((((.((((.((....)).)))).))))..)).)))))..)))).)))..)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
CTGCTAGCTTCATTTCCTTTAAACCGCAATGAAGGGCTTGAGAAGTGATTGGTAGGTGCACCATGGGAATCAGAAGGTTGAATGGTGTGTATCCCATCAA
TGTTAGCTCCAAGACTTGAGGGTGGATTCCTTGATCCCCAGGACCGATTTGACAGAAGAGAGAGAGCAC
dot-bracket secondary structure
.((((..(((..((((..(((((.((.......(((((.......((((.((...(..((((((...((((....))))..))))))..)..)).)))).
....))).))....((((.((((.((....)).)))).))))..)).)))))..)))).)))..)))).
SIMILARITIES| miRBase far-MIR529: 0.0001 PMRD nbe-miR157a: 6e-93 microPC miR157: 0.0001 | UniProt no hits RFAM no hits |
Identical with: nbe-miR157a from PMRD (MNEST048786) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
