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Species belonging to selected taxon:
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
ABOUT THIS RECORD
ID:
MNEST048785
species:
Nicotiana benthamiana
source:
PMRD, original name:
nbe-miR156b
Taxonomy by NCBI:
Nicotiana benthamiana
Nicotiana
Nicotianeae
Nicotianoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCAC
miRNA*
GCTAGCTTCATTTCCTTTAAA
mismatches:
6
bulges:
1
View larger
pre-miRNA
CT
GCTAGCTTCATTTCCTTTAAA
CCGCAATGAAGGGCTTGAGAAGTGATTGGTAGGTGCACCATGGGAATCAGAAGGTTGAATGGTGTGTATCCCATCAA
TGTTAGCTCCAAGACTTGAGGGTGGATTCCTTGATCCCCAGGACCGATT
TGACAGAAGAGAGAGAGCAC
dot-bracket secondary structure
.(
(((..(((..((((..(((((
.((.......(((((.......((((.((...(..((((((...((((....))))..))))))..)..)).)))).
....))).))....((((.((((.((....)).)))).))))..)).))
)))..)))).)))..)))).
SIMILARITIES
miRBase
far-MIR529
:
0.0001
PMRD
nbe-miR157a
:
6e-93
microPC
miR157
:
0.0001
UniProt
no hits
RFAM
no hits
Identical with:
nbe-miR157a
from PMRD (
MNEST048786
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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