ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10182-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTACCGATTTCTGCATCGGCAG miRNA* GCTGATTTTATGATCGACAGCGATG mismatches: 7 bulges: 0 |
pre-miRNA
TCGCTGCTGATTTTATGATCGACAGCGATGCAGTTTTCGCTGCCGATTTCTGCATCGGCGGCGACGCAGTTTTCGCTGCCGATTTCATGATCGGCAGCGA
CGCAGTTTTGGCTGCCGATTTCTGCATCGGCAGCGACGCAGTTTTCGCTACCGATTTCTGCATCGGCAGCGA
dot-bracket secondary structure
(((((((((((.....(((((..(((((.((.....((((((((((((.....(((((((((((........))))))))))).....))))))))))))
.((.(((...(((((((((......)))))))))))))).))..)))))..))))).....)))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
TCGCTGCTGATTTTATGATCGACAGCGATGCAGTTTTCGCTGCCGATTTCTGCATCGGCGGCGACGCAGTTTTCGCTGCCGATTTCATGATCGGCAGCGA
CGCAGTTTTGGCTGCCGATTTCTGCATCGGCAGCGACGCAGTTTTCGCTACCGATTTCTGCATCGGCAGCGA
dot-bracket secondary structure
(((((((((((.....(((((..(((((.((.....((((((((((((.....(((((((((((........))))))))))).....))))))))))))
.((.(((...(((((((((......)))))))))))))).))..)))))..))))).....)))))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12234-akr: 1e-44 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
