miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST052004
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10182-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGCTACCGATTTCTGCATCGGCAG

miRNA*
 GCTGATTTTATGATCGACAGCGATG

mismatches: 7
bulges: 0
View larger
pre-miRNA
 TCGCTGCTGATTTTATGATCGACAGCGATGCAGTTTTCGCTGCCGATTTCTGCATCGGCGGCGACGCAGTTTTCGCTGCCGATTTCATGATCGGCAGCGA
CGCAGTTTTGGCTGCCGATTTCTGCATCGGCAGCGACGCAGTTTTCGCTACCGATTTCTGCATCGGCAGCGA

dot-bracket secondary structure
(((((((((((.....(((((..(((((.((.....((((((((((((.....(((((((((((........))))))))))).....))))))))))))
.((.(((...(((((((((......)))))))))))))).))..)))))..))))).....)))))))))))


SIMILARITIES
miRBase no hits

PMRD ptc-miRf12234-akr: 1e-44

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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