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ABOUT THIS RECORD
ID:
MNEST052249
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10427-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGCAAACAAGGGGTTGATCCCA
miRNA*
GGATTGACCCCTTGCTTGCTCT
mismatches:
3
bulges:
0
View larger
pre-miRNA
ACCTTCCTTGTG
GGATTGACCCCTTGCTTGCTCT
ATACTATCTTGTGTGTTTTAAGCTAGGGTAATTAATCTGAACTAAATAGTATAG
AGCAAACAAGGG
GTTGATCCCA
CGAGGAAGGT
dot-bracket secondary structure
((((((((((((
((((..((((((((.(((((((
(((((((...((.....((((((....))..)))).....))...)))))))))
))))).))))))
))..))))))
))))))))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10848-akr
:
7e-58
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf10849-akr
from PMRD (
MNEST052671
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
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