miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Euphorbia esula
,
Hevea brasiliensis
,
Jatropha curcas
,
Linum usitatissimum
,
Manihot esculenta
,
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Bruguiera gymnorhiza
,
Populus trichocarpa
,
Ricinus communis
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST052249
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10427-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGCAAACAAGGGGTTGATCCCA
miRNA*
GGATTGACCCCTTGCTTGCTCT
mismatches:
3
bulges:
0
View larger
pre-miRNA
ACCTTCCTTGTG
GGATTGACCCCTTGCTTGCTCT
ATACTATCTTGTGTGTTTTAAGCTAGGGTAATTAATCTGAACTAAATAGTATAG
AGCAAACAAGGG
GTTGATCCCA
CGAGGAAGGT
dot-bracket secondary structure
((((((((((((
((((..((((((((.(((((((
(((((((...((.....((((((....))..)))).....))...)))))))))
))))).))))))
))..))))))
))))))))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10848-akr
:
7e-58
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf10849-akr
from PMRD (
MNEST052671
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record