ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10852-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCGACGGATTACGTCCGTCGG miRNA* GACGGAAAAATTCCGTCGGTGTGTG mismatches: 5 bulges: 1 |
pre-miRNA
AAGTTTTACCGACGGAAAAATTCCGTCGGTGTGTGATTAGAAGTTCGTCGGTGATTTTTTTACCGACGTCATCATCGACGGATTACGTCCGTCGGCTTTA
CTT
dot-bracket secondary structure
((((....((((((((.....((((((((((.((((.........(((((((((.....))))))))))))))))))))))).....))))))))....)
)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AAGTTTTACCGACGGAAAAATTCCGTCGGTGTGTGATTAGAAGTTCGTCGGTGATTTTTTTACCGACGTCATCATCGACGGATTACGTCCGTCGGCTTTA
CTT
dot-bracket secondary structure
((((....((((((((.....((((((((((.((((.........(((((((((.....))))))))))))))))))))))).....))))))))....)
)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10429-akr: 3e-41 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
