miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST052674
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10852-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCGACGGATTACGTCCGTCGG

miRNA*
 GACGGAAAAATTCCGTCGGTGTGTG

mismatches: 5
bulges: 1
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pre-miRNA
 AAGTTTTACCGACGGAAAAATTCCGTCGGTGTGTGATTAGAAGTTCGTCGGTGATTTTTTTACCGACGTCATCATCGACGGATTACGTCCGTCGGCTTTA
CTT

dot-bracket secondary structure
((((....((((((((.....((((((((((.((((.........(((((((((.....))))))))))))))))))))))).....))))))))....)
)))


SIMILARITIES
miRBase no hits

PMRD ptc-miRf10429-akr: 3e-41

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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