ABOUT THIS RECORDspecies: Populus tremula
miRNA family: MIR169
source: PMRD, original name: ptr-miR169a
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAGGTTGTTCTTGGCTA mismatches: 3 bulges: 0 |
pre-miRNA
CAGCCAAGGATGACTTGCCGACGACTCGCTTTTGCTTTTGCTTCCATCAATATAGGCATAATCAAGAAGAGATGAATCCGTTGGCAGGTTGTTCTTGGCT
A
dot-bracket secondary structure
.(((((((((..(((((((((((..((((((((.(((.(((((..........))))).....)))))))).)))...)))))))))))..)))))))))
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGCCAAGGATGACTTGCCGACGACTCGCTTTTGCTTTTGCTTCCATCAATATAGGCATAATCAAGAAGAGATGAATCCGTTGGCAGGTTGTTCTTGGCT
A
dot-bracket secondary structure
.(((((((((..(((((((((((..((((((((.(((.(((((..........))))).....)))))))).)))...)))))))))))..)))))))))
.
SIMILARITIES| miRBase ptc-MIR169b: 1e-31 PMRD ptc-miRf10181-akr: 1e-31 microPC miR169: 5e-52 | UniProt no hits RFAM MIR169_2: 2e-30 |
Identical with: miR169 from microPC (MNEST045442) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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