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Species belonging to selected taxon:
Euphorbia esula
,
Hevea brasiliensis
,
Jatropha curcas
,
Linum usitatissimum
,
Manihot esculenta
,
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Bruguiera gymnorhiza
,
Populus trichocarpa
,
Ricinus communis
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST054367
species:
Populus tremula
miRNA family:
MIR169
source:
PMRD, original name:
ptr-miR169a
Taxonomy by NCBI:
Populus tremula
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGA
miRNA*
GGCAGGTTGTTCTTGGCTA
mismatches:
3
bulges:
0
View larger
pre-miRNA
CAGCCAAGGATGACTTGCCGA
CGACTCGCTTTTGCTTTTGCTTCCATCAATATAGGCATAATCAAGAAGAGATGAATCCGTT
GGCAGGTTGTTCTTGGCT
A
dot-bracket secondary structure
.(((((((((..(((((((((
((..((((((((.(((.(((((..........))))).....)))))))).)))...))))
)))))))..)))))))))
.
SIMILARITIES
miRBase
ptc-MIR169b
:
1e-31
PMRD
ptc-miRf10181-akr
:
1e-31
microPC
miR169
:
5e-52
UniProt
no hits
RFAM
MIR169_2: 2e-30
Identical with:
miR169
from microPC (
MNEST045442
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record