ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: MIR166
source: PMRD, original name: pvu-miR166
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAGG mismatches: 5 bulges: 0 |
pre-miRNA
GAGGTTGAGAGGAATGTTGTCTGGCTCGAGGTCATGGAGGAGGAGAGTTCTCAGATAAACTCTTTCACCCAAAGTTTCCAATGGAAATTTACCCTCTAAC
ACCAAAATGATTCTCGGACCAGGCTTCATTCCCCCCACCCAACT
dot-bracket secondary structure
..((.((.(.((((((..((((((..((((((((((((((.((((((((........))))))))......((((((((...))))))))..)))))...
......)))).)))))..))))))..)))))).).)).))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGGTTGAGAGGAATGTTGTCTGGCTCGAGGTCATGGAGGAGGAGAGTTCTCAGATAAACTCTTTCACCCAAAGTTTCCAATGGAAATTTACCCTCTAAC
ACCAAAATGATTCTCGGACCAGGCTTCATTCCCCCCACCCAACT
dot-bracket secondary structure
..((.((.(.((((((..((((((..((((((((((((((.((((((((........))))))))......((((((((...))))))))..)))))...
......)))).)))))..))))))..)))))).).)).))....
SIMILARITIES| miRBase pvu-MIR166a: 4e-78 PMRD gma-miR166b: 4e-26 microPC miR166: 6e-65 | UniProt no hits RFAM mir-166: 0.00000000000004 |
Identical with: miR166 from microPC (MNEST046743) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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