miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST054379
species: Phaseolus vulgaris
miRNA family: MIR166
source: PMRD, original name: pvu-miR166

Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTCTGGCTCGAGG

mismatches: 5
bulges: 0
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pre-miRNA
 GAGGTTGAGAGGAATGTTGTCTGGCTCGAGGTCATGGAGGAGGAGAGTTCTCAGATAAACTCTTTCACCCAAAGTTTCCAATGGAAATTTACCCTCTAAC
ACCAAAATGATTCTCGGACCAGGCTTCATTCCCCCCACCCAACT

dot-bracket secondary structure
..((.((.(.((((((..((((((..((((((((((((((.((((((((........))))))))......((((((((...))))))))..)))))...
......)))).)))))..))))))..)))))).).)).))....


SIMILARITIES
miRBase pvu-MIR166a: 4e-78

PMRD gma-miR166b: 4e-26

microPC miR166: 6e-65		UniProt no hits

RFAM mir-166: 0.00000000000004

Identical with: miR166 from microPC (MNEST046743)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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