ABOUT THIS RECORDspecies: Phaseolus vulgaris
source: PMRD, original name: pvu-miR1514a
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCATTTTGAAAATAGGCATTG miRNA* TCTTCCAATTCCAATGCCTATTTTAAGATGAAAA mismatches: 0 bulges: 14 |
pre-miRNA
ATTGAAGAACGCCTTGCCTACCTTCTCACTGCATCCTTTTGAATGGAAACAGGGCTTTCCTGTTTTCATTTTGAAAATAGGCATTGCATTACATTTCGAT
GCGTCTTCCAATTCCAATGCCTATTTTAAGATGAAAACAAGGATACACTGTTTTTGTTTGAAACTGTTGTGAAGGAAGATAAGACTCCCGAGTTCTTCAA
TT
dot-bracket secondary structure
((((((((((.(((((.((.(((((.((..(((...(((..((..(((((((.....(((((((((((((((((((.(((((((((((((.......)))
)).............))))))))))))))))))))))).))))....)))))))..))..))).))))).))))).)).))))......).)))))))))
).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
ATTGAAGAACGCCTTGCCTACCTTCTCACTGCATCCTTTTGAATGGAAACAGGGCTTTCCTGTTTTCATTTTGAAAATAGGCATTGCATTACATTTCGAT
GCGTCTTCCAATTCCAATGCCTATTTTAAGATGAAAACAAGGATACACTGTTTTTGTTTGAAACTGTTGTGAAGGAAGATAAGACTCCCGAGTTCTTCAA
TT
dot-bracket secondary structure
((((((((((.(((((.((.(((((.((..(((...(((..((..(((((((.....(((((((((((((((((((.(((((((((((((.......)))
)).............))))))))))))))))))))))).))))....)))))))..))..))).))))).))))).)).))))......).)))))))))
).
SIMILARITIES| miRBase pvu-MIR1514a: 2e-112 PMRD gma-miR1514a: 0.000003 microPC no hits | UniProt no hits RFAM no hits |
Identical with: pvu-MIR1514a from miRBase (MNEST041029) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
