miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST054384
species: Phaseolus vulgaris
source: PMRD, original name: pvu-miR1514a

Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCATTTTGAAAATAGGCATTG

miRNA*
 TCTTCCAATTCCAATGCCTATTTTAAGATGAAAA

mismatches: 0
bulges: 14
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pre-miRNA
 ATTGAAGAACGCCTTGCCTACCTTCTCACTGCATCCTTTTGAATGGAAACAGGGCTTTCCTGTTTTCATTTTGAAAATAGGCATTGCATTACATTTCGAT
GCGTCTTCCAATTCCAATGCCTATTTTAAGATGAAAACAAGGATACACTGTTTTTGTTTGAAACTGTTGTGAAGGAAGATAAGACTCCCGAGTTCTTCAA
TT

dot-bracket secondary structure
((((((((((.(((((.((.(((((.((..(((...(((..((..(((((((.....(((((((((((((((((((.(((((((((((((.......)))
)).............))))))))))))))))))))))).))))....)))))))..))..))).))))).))))).)).))))......).)))))))))
).


SIMILARITIES
miRBase pvu-MIR1514a: 2e-112

PMRD gma-miR1514a: 0.000003

microPC no hits		UniProt no hits

RFAM no hits

Identical with: pvu-MIR1514a from miRBase (MNEST041029)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"



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