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ABOUT THIS RECORD

ID: MNEST054386
species: Phaseolus vulgaris
miRNA family: MIR2119
source: PMRD, original name: pvu-miR2119

Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCAAAGGGAGTTGTAGGGGAA

miRNA*
CCTCTACAACTCTCTTTTATT

mismatches: 3
bulges: 0

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pre-miRNA
AGCAATGGTGTTATTTTTATACTTTATTTTCTATGCTTTTCCTCTACAACTCTCTTTTATTTTGGATAAATGAAGTGGATTTCTACTCTTTGATTGGAGA
AAAAAAGTGGATTTCTATTTTTTTCAATCAAAGGGAGTTGTAGGGGAA


dot-bracket secondary structure
((((..(((((.......)))))..........))))..((((((((((((((((((....(((((.....((((((((..((((((.(((.........
.))).))))))..)))))))).)))))..)))))))))))))))))).



SIMILARITIES
miRBase pvu-MIR2119: 8e-18

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"




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