miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST054386
species: Phaseolus vulgaris
miRNA family: MIR2119
source: PMRD, original name: pvu-miR2119

Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCAAAGGGAGTTGTAGGGGAA

miRNA*
 CCTCTACAACTCTCTTTTATT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 AGCAATGGTGTTATTTTTATACTTTATTTTCTATGCTTTTCCTCTACAACTCTCTTTTATTTTGGATAAATGAAGTGGATTTCTACTCTTTGATTGGAGA
AAAAAAGTGGATTTCTATTTTTTTCAATCAAAGGGAGTTGTAGGGGAA

dot-bracket secondary structure
((((..(((((.......)))))..........))))..((((((((((((((((((....(((((.....((((((((..((((((.(((.........
.))).))))))..)))))))).)))))..)))))))))))))))))).


SIMILARITIES
miRBase pvu-MIR2119: 8e-18

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"



Liczniki na strone;