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ABOUT THIS RECORD
ID:
MNEST054539
species:
Solanum lycopersicum
source:
PMRD, original name:
sly-miR158b
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATCCAAATGTAGACAAAGCA
miRNA*
CTCATAACCCTAATTTCCATTTCCCTTTCA
mismatches:
7
bulges:
10
View larger
pre-miRNA
TTTG
CTCATAACCCTAATTTCCATTTCCCTTTCA
CATCAAGCAATTGCAAATG
ATCCAAATGTAGACAAAGCA
A
dot-bracket secondary structure
.(((
((.......(((.....(((((.....(((
...(((....)))....))
)...))))))))....))))
)
SIMILARITIES
miRBase
ath-MIR158b
:
0.0008
PMRD
sly-miR158a
:
3e-22
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
sly-miR158a
from PMRD (
MNEST054538
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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