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Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST054539
species: Solanum lycopersicum
source: PMRD, original name: sly-miR158b

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATCCAAATGTAGACAAAGCA

miRNA*
 CTCATAACCCTAATTTCCATTTCCCTTTCA

mismatches: 7
bulges: 10
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pre-miRNA
 TTTGCTCATAACCCTAATTTCCATTTCCCTTTCACATCAAGCAATTGCAAATGATCCAAATGTAGACAAAGCAA

dot-bracket secondary structure
.(((((.......(((.....(((((.....(((...(((....)))....)))...))))))))....)))))


SIMILARITIES
miRBase ath-MIR158b: 0.0008

PMRD sly-miR158a: 3e-22

microPC no hits		UniProt no hits

RFAM no hits

Identical with: sly-miR158a from PMRD (MNEST054538)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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