ABOUT THIS RECORDspecies: Solanum lycopersicum
source: PMRD, original name: sly-miR1917
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTAATAAAGAGTGCTAAAGT miRNA* TTTAGGGACCTATATAAAGAGTGT mismatches: 5 bulges: 3 |
pre-miRNA
TTTTAGCGGCATTAAATATTGACATTAATAAAGAGTGCTAAAGTCTTTACCGGTATTAGTTAAGTGTCATTAGAACCAATGTAGCTAAAGGCTTTAGGGA
CCTATATAAAGAGTGTCAATTGCCGCTAAAA
dot-bracket secondary structure
.((((((((((......(((((((((.(((.((..(.((((((((((((.(..((((.(((..(......)..))).))))..).)))))))))))).).
.)).)))....))))))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
TTTTAGCGGCATTAAATATTGACATTAATAAAGAGTGCTAAAGTCTTTACCGGTATTAGTTAAGTGTCATTAGAACCAATGTAGCTAAAGGCTTTAGGGA
CCTATATAAAGAGTGTCAATTGCCGCTAAAA
dot-bracket secondary structure
.((((((((((......(((((((((.(((.((..(.((((((((((((.(..((((.(((..(......)..))).))))..).)))))))))))).).
.)).)))....))))))))))))))))))).
SIMILARITIES| miRBase sly-MIR1917: 2e-70 PMRD sly-miR319: 2e-70 microPC no hits | UniProt no hits RFAM no hits |
Identical with: sly-MIR1917 from miRBase (MNEST041551) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
