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Species belonging to selected taxon:
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST054564
species:
Solanum lycopersicum
source:
PMRD, original name:
sly-miR1917
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTAATAAAGAGTGCTAAAGT
miRNA*
TTTAGGGACCTATATAAAGAGTGT
mismatches:
5
bulges:
3
View larger
pre-miRNA
TTTTAGCGGCATTAAATATTGAC
ATTAATAAAGAGTGCTAAAGT
CTTTACCGGTATTAGTTAAGTGTCATTAGAACCAATGTAGCTAAAGGC
TTTAGGGA
CCTATATAAAGAGTGT
CAATTGCCGCTAAAA
dot-bracket secondary structure
.((((((((((......((((((
(((.(((.((..(.(((((((
(((((.(..((((.(((..(......)..))).))))..).)))))))
))))).).
.)).)))....)))))
)))))))))))))).
SIMILARITIES
miRBase
sly-MIR1917
:
2e-70
PMRD
sly-miR319
:
2e-70
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
sly-MIR1917
from miRBase (
MNEST041551
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T,
Genome Res. 18:1602-1609(2008).
,
"Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"