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ABOUT THIS RECORD
ID:
MNEST054622
species:
Saccharum officinarum
source:
PMRD, original name:
sof-miR156d
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCAC
miRNA*
AACGGTGAC
mismatches:
19
bulges:
0
View larger
pre-miRNA
GCACGCTCCCCAGTCCAAGTCCTCAGCACTACCATCAATTTTGAACCCAGCAGCTGCACATAAACCCAGCAGCAGCACATAAAAACAGGACAATTTAATT
CTACTGCCAACAGAATGGCAGTGCCTGTGAAGAATCCTCAAACATAGCATCAGGAACAAACACATGGTGGCCAACACCGGCCGCAAATGCAATGGTCATA
GCTGTTGTTGCAGCCTGCGACACAGCAGCGATCCGAGAGAGTGAAGAGGCAACCTGGGGTTGGCCATCGGTGGGGATGCCAGCAGCAGAGGGGCGATGCA
GC
AACGG
TGAC
AGAAGAGAGAGAGCAC
dot-bracket secondary structure
(((((((((.(...(((.((((((..((((....((..((((((.....((.(((((...........))))).))..........((((...((((...
.((((((((......))))))))....))))...))))...........))))))...........((((((......)))))).........((((...
(((((.(((((.....))))))))))...)))).))...))))..))))..)).))).((((((.(((......)))))))))....).)))))).))).
..
...(.
...)
................
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q2R3Y1|SPL19_ORYSJ: 0.0001
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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