miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST054622
species: Saccharum officinarum
source: PMRD, original name: sof-miR156d

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGAGAGCAC

miRNA*
 AACGGTGAC

mismatches: 19
bulges: 0
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pre-miRNA
 GCACGCTCCCCAGTCCAAGTCCTCAGCACTACCATCAATTTTGAACCCAGCAGCTGCACATAAACCCAGCAGCAGCACATAAAAACAGGACAATTTAATT
CTACTGCCAACAGAATGGCAGTGCCTGTGAAGAATCCTCAAACATAGCATCAGGAACAAACACATGGTGGCCAACACCGGCCGCAAATGCAATGGTCATA
GCTGTTGTTGCAGCCTGCGACACAGCAGCGATCCGAGAGAGTGAAGAGGCAACCTGGGGTTGGCCATCGGTGGGGATGCCAGCAGCAGAGGGGCGATGCA
GCAACGGTGACAGAAGAGAGAGAGCAC

dot-bracket secondary structure
(((((((((.(...(((.((((((..((((....((..((((((.....((.(((((...........))))).))..........((((...((((...
.((((((((......))))))))....))))...))))...........))))))...........((((((......)))))).........((((...
(((((.(((((.....))))))))))...)))).))...))))..))))..)).))).((((((.(((......)))))))))....).)))))).))).
.....(....)................


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q2R3Y1|SPL19_ORYSJ: 0.0001

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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