ABOUT THIS RECORDspecies: Saccharum officinarum
source: PMRD, original name: sof-miR156u
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCAC miRNA* GCAGGCATTGATCCGCCATGGCTGTGGC mismatches: 11 bulges: 10 |
pre-miRNA
GTTGCAGGCATTGATCCGCCATGGCTGTGGCCGGCGCTGTGGGTAGTATCCCATGGCTGAGTTGACAGAAGAGAGAGAGCAC
dot-bracket secondary structure
..(((.(((........)))....(((((((((((.(.(((((......)))))))))).))).))))..........))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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GTTGCAGGCATTGATCCGCCATGGCTGTGGCCGGCGCTGTGGGTAGTATCCCATGGCTGAGTTGACAGAAGAGAGAGAGCAC
dot-bracket secondary structure
..(((.(((........)))....(((((((((((.(.(((((......)))))))))).))).))))..........))).
SIMILARITIES| miRBase far-MIR156b: 0.00000000000002 PMRD hvv-miR156b: 0.00000000000007 microPC miR157: 0.00006 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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