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Species belonging to selected taxon:
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST054627
species:
Saccharum officinarum
source:
PMRD, original name:
sof-miR156u
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCAC
miRNA*
GCAGGCATTGATCCGCCATGGCTGTGGC
mismatches:
11
bulges:
10
View larger
pre-miRNA
GTT
GCAGGCATTGATCCGCCATGGCTGTGGC
CGGCGCTGTGGGTAGTATCCCATGGCTGAGT
TGACAGAAGAGAGAGAGCAC
dot-bracket secondary structure
..(
((.(((........)))....(((((((
((((.(.(((((......)))))))))).))
).))))..........))).
SIMILARITIES
miRBase
far-MIR156b
:
0.00000000000002
PMRD
hvv-miR156b
:
0.00000000000007
microPC
miR157
:
0.00006
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
download this record