ABOUT THIS RECORDspecies: Triticum aestivum
source: PMRD, original name: tae-miR319c
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGAGTGAAGGGAGCTCCA miRNA* GAAGCTCTGCCTTATGCTCCCG mismatches: 2 bulges: 4 |
pre-miRNA
ATTGGAGTGAAGGGAGCTCCATCTTCCAGGGACCAGTCATGGGCCTGGAAGTAGAGAAGTTGCCATTTGAAAAGGCATGGCCGCCATCGAAGGTACCATT
AATGGCCGCGTTCAACCAAGGAAATGAGATCTCAGATTCTTTCAGAACTTCTGCTTGGTTTACTTGATCCATGAAGCCATGGTTTTTTGACTCAAAGTAC
AGACCAGGTAAATTGCTGAAAGAAACATCTGGAAGCTCTGCCTTATGCTCCCG
dot-bracket secondary structure
...((((((((((((((((((.((((((((..(((....))).))))))))..((((...((((.........))))..((.(((((..(.(....).).
.))))).))....................))))...(((((((((......((((((((((((((((..((.(((((....))))).))..)).))))).
.))))))))).....))))))))).....))).)))))..)))).))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
degradome data
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ATTGGAGTGAAGGGAGCTCCATCTTCCAGGGACCAGTCATGGGCCTGGAAGTAGAGAAGTTGCCATTTGAAAAGGCATGGCCGCCATCGAAGGTACCATT
AATGGCCGCGTTCAACCAAGGAAATGAGATCTCAGATTCTTTCAGAACTTCTGCTTGGTTTACTTGATCCATGAAGCCATGGTTTTTTGACTCAAAGTAC
AGACCAGGTAAATTGCTGAAAGAAACATCTGGAAGCTCTGCCTTATGCTCCCG
dot-bracket secondary structure
...((((((((((((((((((.((((((((..(((....))).))))))))..((((...((((.........))))..((.(((((..(.(....).).
.))))).))....................))))...(((((((((......((((((((((((((((..((.(((((....))))).))..)).))))).
.))))))))).....))))))))).....))).)))))..)))).))))))..
SIMILARITIES| miRBase gma-MIR159b: 0.0002 PMRD gma-miR159b: 0.0002 microPC miR159: 0.0002 | UniProt sp|Q0JIC2|GAM1_ORYSJ: 0.000000000002 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
degradome data
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