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Species belonging to selected taxon:
Agrostis stolonifera
,
Avena barbata
,
Avena sativa
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Pseudoroegneria spicata
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Brachypodium distachyon
,
Triticum aestivum
ABOUT THIS RECORD
ID:
MNEST054688
species:
Triticum aestivum
source:
PMRD, original name:
tae-miR319c
Taxonomy by NCBI:
Triticum aestivum
Triticum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGAGTGAAGGGAGCTCCA
miRNA*
GAAGCTCTGCCTTATGCTCCCG
mismatches:
2
bulges:
4
View larger
pre-miRNA
A
TTGGAGTGAAGGGAGCTCCA
TCTTCCAGGGACCAGTCATGGGCCTGGAAGTAGAGAAGTTGCCATTTGAAAAGGCATGGCCGCCATCGAAGGTACCATT
AATGGCCGCGTTCAACCAAGGAAATGAGATCTCAGATTCTTTCAGAACTTCTGCTTGGTTTACTTGATCCATGAAGCCATGGTTTTTTGACTCAAAGTAC
AGACCAGGTAAATTGCTGAAAGAAACATCTG
GAAGCTCTGCCTTATGCTCCCG
dot-bracket secondary structure
.
..((((((((((((((((((
.((((((((..(((....))).))))))))..((((...((((.........))))..((.(((((..(.(....).).
.))))).))....................))))...(((((((((......((((((((((((((((..((.(((((....))))).))..)).))))).
.))))))))).....))))))))).....))
).)))))..)))).))))))..
SIMILARITIES
miRBase
gma-MIR159b
:
0.0002
PMRD
gma-miR159b
:
0.0002
microPC
miR159
:
0.0002
UniProt
sp|Q0JIC2|GAM1_ORYSJ: 0.000000000002
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
degradome data
download this record