ABOUT THIS RECORDspecies: Picea glauca
miRNA family: miR3710
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAACCTGACGGGCCTCCA miRNA* GGAACCTGACGGGCCTCCAAA mismatches: 5 bulges: 0 |
pre-miRNA
CAGACTCGGTTGGGAACCTGACGGGCCTCCAAACGCTTGACTTGCGCGGGTGCTCCACTCTGCAGACGTTCCCAGACTCGGTTGGGAACCTGACGGGCCT
CCAAACGCTTGACTTGAGCTGGTGGTCCACTCTGCAGACGCTCCCAGACTCGGTTGGAAACCTGACGGGCCTCCAAACGCTTGA
dot-bracket secondary structure
(((...((.(((((..((((.((((..(((((.....(((.((....(((.((.....((((((((.((((((((......)))))))).....(((((.
(((...((((.....))))))).)))))..)))))))).)).))).)).))).)))))..)))).))))..))))).)).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CAGACTCGGTTGGGAACCTGACGGGCCTCCAAACGCTTGACTTGCGCGGGTGCTCCACTCTGCAGACGTTCCCAGACTCGGTTGGGAACCTGACGGGCCT
CCAAACGCTTGACTTGAGCTGGTGGTCCACTCTGCAGACGCTCCCAGACTCGGTTGGAAACCTGACGGGCCTCCAAACGCTTGA
dot-bracket secondary structure
(((...((.(((((..((((.((((..(((((.....(((.((....(((.((.....((((((((.((((((((......)))))))).....(((((.
(((...((((.....))))))).)))))..)))))))).)).))).)).))).)))))..)))).))))..))))).)).))).
SIMILARITIES| miRBase pta-MIR1315: 4e-39 PMRD pta-miR1315: 4e-39 microPC no hits | UniProt sp|Q6UWE0|LRSM1_HUMAN: 0.00004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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