miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST055448
species: Picea glauca
miRNA family: miR3710
source: miRNEST

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAAACCTGACGGGCCTCCA

miRNA*
GGAACCTGACGGGCCTCCAAA

mismatches: 5
bulges: 0

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pre-miRNA
CAGACTCGGTTGGGAACCTGACGGGCCTCCAAACGCTTGACTTGCGCGGGTGCTCCACTCTGCAGACGTTCCCAGACTCGGTTGGGAACCTGACGGGCCT
CCAAACGCTTGACTTGAGCTGGTGGTCCACTCTGCAGACGCTCCCAGACTCGGTTGGAAACCTGACGGGCCTCCAAACGCTTGA


dot-bracket secondary structure
(((...((.(((((..((((.((((..(((((.....(((.((....(((.((.....((((((((.((((((((......)))))))).....(((((.
(((...((((.....))))))).)))))..)))))))).)).))).)).))).)))))..)))).))))..))))).)).))).



SIMILARITIES
miRBase pta-MIR1315: 4e-39

PMRD pta-miR1315: 4e-39

microPC no hits
UniProt sp|Q6UWE0|LRSM1_HUMAN: 0.00004

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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