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Species belonging to selected taxon:

Ricinus communis



ABOUT THIS RECORD

ID: MNEST040337
species: Ricinus communis
miRNA family: MIR157
source: miRBase, original name: rco-MIR156h (MI0013377)

Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAC

miRNA*
GCTCTCTATGCTTCTGTCATCA

mismatches: 1
bulges: 1

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pre-miRNA
TGTTGTTGACAGAAGATAGAGAGCACAGATGATGATGTGCAATGACTTTTTCTGCATCTCACTCCTTTGTGCTCTCTATGCTTCTGTCATCACCTTC

dot-bracket secondary structure
...((.(((((((((((((((((((((((.(((((.(((((...........))))).))).)).)))))))))))))).))))))))).)).....


SIMILARITIES
miRBase ptc-MIR156j: 1e-28

PMRD ptc-miR156j: 1e-28

microPC miR157: 6e-27
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR

references

[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"




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