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Species belonging to selected taxon:

Drosophila melanogaster, Drosophila simulans, Drosophila sechellia, Drosophila auraria, Drosophila pseudoobscura, Teleopsis dalmanni, Drosophila willistoni, Drosophila ananassae, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Drosophila mojavensis, Drosophila yakuba



ABOUT THIS RECORD

ID: MNEST006576
species: Drosophila melanogaster
miRNA family: mir-996
source: miRNEST

Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACTAGATTTCATGCTCGTCT

miRNA*
GCGAACATGGATCTAGTGCACG

mismatches: 2
bulges: 2

View larger
pre-miRNA
TCTTTTCTGACTCTATTTTGTCGGCGAACATGGATCTAGTGCACGGTGGTTCATGATTAAGTTCGTGACTAGATTTCATGCTCGTCTATTAAGTTGGGTC
AGCACAA


dot-bracket secondary structure
......(((((((.((((.((.(((((.((((((((((((.((((((((((...)))))...))))))))))).)))))).))))).)).)))).)))))
)).....



SIMILARITIES
miRBase dme-mir-996: 4e-50

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-996: 6e-46
most similar mature miRNAs

Identical with: dme-mir-996 from miRBase (MNEST036569)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence





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