miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Drosophila melanogaster, Drosophila simulans, Drosophila sechellia, Drosophila auraria, Drosophila pseudoobscura, Teleopsis dalmanni, Drosophila willistoni, Drosophila ananassae, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Drosophila mojavensis, Drosophila yakuba



ABOUT THIS RECORD

ID: MNEST037104
species: Drosophila pseudoobscura
miRNA family: mir-2576
source: miRBase, original name: dps-mir-2576-2 (MI0011728)

Taxonomy by NCBI:
Drosophila pseudoobscura pseudoobscura subgroup obscura group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTCGAGTGTGGAGAGCATGGGA

miRNA*
 TCATCTCATCCGCCCGCTCGAGAG

mismatches: 0
bulges: 4
View larger
pre-miRNA
 CGGCGATCGGGTCTCTCGAGTGTGGAGAGCATGGGAGTTGGCGGACACATGAGTGTTCCACCATGAACCTCGTCCAGGCCACTCTCATCTCATCCGCCCG
CTCGAGAGGTCGCGATCGTC

dot-bracket secondary structure
.(((((((((..(((((((((((((((((.((((((((.(((((((....(((.((((......)))))))))))..)))))))))))))).)))))..)
))))))))..).))))))))


SIMILARITIES
miRBase dps-mir-2576-1: 5e-59

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC, Nat Genet. 42:6-9(2010)., "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila"



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