miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Anoplopoma fimbria, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Sebastes rastrelliger, Solea senegalensis, Thunnus thynnus, Cynoglossus semilaevis

ABOUT THIS RECORD

ID: MNEST009554
species: Paralabidochromis chilotes
miRNA family: miR-4103
source: miRNEST

Taxonomy by NCBI:
Paralabidochromis chilotes Paralabidochromis Haplochromini Pseudocrenilabrinae African cichlids Cichlidae Labroidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
GCGCTGTGGGTCCGCTGTGTT

miRNA*
CATCAGGACTCGGCAGCGCAA

mismatches: 3
bulges: 2

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pre-miRNA
TACAAATGGATGCGCTGTGGGTCCGCTGTGTTTTCCTCCTGGCATGTTGCTGTGCATCAGGACTCGGCAGCGCAAACAAATGC

dot-bracket secondary structure
......((..((((((((((((((...((((........(((((...))))).))))..)))))).))))))))..)).....

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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