miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lottia gigantea



ABOUT THIS RECORD

ID: MNEST038857
species: Lottia gigantea
miRNA family: mir-33
source: miRBase, original name: lgi-mir-33 (MI0010110)

Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTGCATTGTAGTTGCATTGCAT

miRNA*
GCAATGCATCTGCAGTGCAAAC

mismatches: 2
bulges: 0

View larger
pre-miRNA
CGAACTAAGCAGTTGTGATGGTGCATTGTAGTTGCATTGCATTTGTTATAAATTATGCAATGCATCTGCAGTGCAAACATTACGATTGAAACTATCACCT
A


dot-bracket secondary structure
.((......(((((((((((.((((((((((.((((((((((............)))))))))).))))))))))..)))))))))))......))....
.



SIMILARITIES
miRBase cte-mir-33: 0.000001

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-33: 0.00002

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




Liczniki na strone;