ABOUT THIS RECORDspecies: Oryzias latipes
miRNA family: miR-1556
source: miRNEST
Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCAGGCTGGAAGTAGGAGTG miRNA* CATCTAGTCCAGTATGCTCA mismatches: 5 bulges: 1 |
pre-miRNA
AAAAAATGGAATTCAGGCTGGAAGTAGGAGTGAAACTGGCGCCGAAGGGACTCACGCAGACAAGCTGTTGACCTTCAAGCATCAGCCACATCTAGTCCAG
TATGCTCAGTCCAGTG
dot-bracket secondary structure
......((((...((.((((((..((((.(((...((((.((.(((((...(((.((((.....))))))))))))..)).)))).))).)))).)))))
).)).....))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AAAAAATGGAATTCAGGCTGGAAGTAGGAGTGAAACTGGCGCCGAAGGGACTCACGCAGACAAGCTGTTGACCTTCAAGCATCAGCCACATCTAGTCCAG
TATGCTCAGTCCAGTG
dot-bracket secondary structure
......((((...((.((((((..((((.(((...((((.((.(((((...(((.((((.....))))))))))))..)).)))).))).)))).)))))
).)).....))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
