ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-17
source: miRBase, original name: gga-mir-20b (MI0001517)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAAAGTGCTCATAGTGCAGGTAG miRNA* ACTGTAATGTGGGCACTTACAG mismatches: 3 bulges: 1 |
pre-miRNA
CTAGCAGTATCAAAGTGCTCATAGTGCAGGTAGCTTGGCATTGGACCTACTGTAATGTGGGCACTTACAGTACTGTTAGATAAAG
dot-bracket secondary structure
((((((((((..(((((((((((.(((((.(((.((.......)).)))))))).)))))))))))...))))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hubbard SJ, Grafham DV, Beattie KJ, Overton IM, McLaren SR, Croning MD, Boardman PE, Bonfield JK, Burnside J, Davies RM, Farrell ER, Francis MD, Griffiths-Jones S, Humphray SJ, Hyland C, Scott CE, Tang H, Taylor RG, Tickle C, Brown WR, Birney E, Rogers J,, Genome Res. 15:174-183(2005)., "Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags"
[2] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[3] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
CTAGCAGTATCAAAGTGCTCATAGTGCAGGTAGCTTGGCATTGGACCTACTGTAATGTGGGCACTTACAGTACTGTTAGATAAAG
dot-bracket secondary structure
((((((((((..(((((((((((.(((((.(((.((.......)).)))))))).)))))))))))...))))))))))......
SIMILARITIES| miRBase tgu-mir-20b: 3e-31 PMRD no hits microPC no hits | UniProt no hits RFAM mir-17: 2e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hubbard SJ, Grafham DV, Beattie KJ, Overton IM, McLaren SR, Croning MD, Boardman PE, Bonfield JK, Burnside J, Davies RM, Farrell ER, Francis MD, Griffiths-Jones S, Humphray SJ, Hyland C, Scott CE, Tang H, Taylor RG, Tickle C, Brown WR, Birney E, Rogers J,, Genome Res. 15:174-183(2005)., "Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags"
[2] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[3] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
