ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-1803
source: miRBase, original name: gga-mir-1803 (MI0007548)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGACTTCAGCGGGGTTTGG miRNA* AGAGCCCATTGTAGTCAATGG mismatches: 3 bulges: 0 |
pre-miRNA
GGACTTAGGGCATGATCCAGAGCCCATTGTAGTCAATGGGAGTCTTTTTCCATTGACTTCAGCGGGGTTTGGATCAGGCCTTTACTTCC
dot-bracket secondary structure
(((...(((((.(((((((((.(((.(((.((((((((((((....)))))))))))).))).))).))))))))).)))))....)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
GGACTTAGGGCATGATCCAGAGCCCATTGTAGTCAATGGGAGTCTTTTTCCATTGACTTCAGCGGGGTTTGGATCAGGCCTTTACTTCC
dot-bracket secondary structure
(((...(((((.(((((((((.(((.(((.((((((((((((....)))))))))))).))).))).))))))))).)))))....)))
SIMILARITIES| miRBase tgu-mir-1803: 6e-39 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
