miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta

ABOUT THIS RECORD

ID: MNEST007861
species: Homo sapiens
miRNA family: mir-196
source: miRNEST

Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TAGGTAGTTTCCTGTTGTTGG

miRNA*
GACAGCACGACACTGCCTTCA

mismatches: 3
bulges: 0

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pre-miRNA
CACCAGAACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCAT

dot-bracket secondary structure
((((.((.....))))))....(((((((.((.(((((((((((..........))))))))))).)).)))))))....

SIMILARITIES

miRBase mmu-mir-196b: 1e-36

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-196: 9e-32

most similar mature miRNAs

Identical with: cfa-mir-196b from miRBase (MNEST026754)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence