miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta

ABOUT THIS RECORD

ID: MNEST027997
species: Macaca mulatta
miRNA family: mir-548
source: miRBase, original name: mml-mir-548b (MI0007820)

Taxonomy by NCBI:
Macaca mulatta Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
CAAAAACCTCAATTGCTTTTGT

miRNA*
AAAAGTAATTGGGGCTTGGGCC

mismatches: 4
bulges: 0

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pre-miRNA
CAGGCTATGTATTTAGGTTGGTGCAAAAGTAATTGGGGCTTGGGCCTTTATTTTCAATGGCAAAAACCTCAATTGCTTTTGTGCCAACCTAATACTT

dot-bracket secondary structure
........(((((.(((((((..(((((((((((((((.((..(((............)))..)).)))))))))))))))..))))))))))))..

SIMILARITIES

miRBase hsa-mir-548b: 4e-31

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-548: 0.00000000002

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Yue J, Sheng Y, Orwig KE, BMC Genomics. 9:8(2008)., "Identification of novel homologous microRNA genes in the rhesus macaque genome"