ABOUT THIS RECORDspecies: Rattus norvegicus
source: miRBase, original name: rno-mir-349 (MI0000636)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCCTGCTGTCTTAACCTCT miRNA* CATGTAAGGTTGGGGGAGGGGGCTGTGTCTAGCAAGTCTTCTTCCCCCACAGCCCTGCTGTC mismatches: 7 bulges: 40 |
pre-miRNA
GAAGACTCTAGCATGTAAGGTTGGGGGAGGGGGCTGTGTCTAGCAAGTCTTCTTCCCCCACAGCCCTGCTGTCTTAACCTCTAGGTGTTCCGGCTCC
dot-bracket secondary structure
(((.((.((((....((((...(((((((((((((((.....)).))))))))))))).(((((...)))))))))....)))))).))).......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G, Proc Natl Acad Sci U S A. 101:360-365(2004)., "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons"
GAAGACTCTAGCATGTAAGGTTGGGGGAGGGGGCTGTGTCTAGCAAGTCTTCTTCCCCCACAGCCCTGCTGTCTTAACCTCTAGGTGTTCCGGCTCC
dot-bracket secondary structure
(((.((.((((....((((...(((((((((((((((.....)).))))))))))))).(((((...)))))))))....)))))).))).......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G, Proc Natl Acad Sci U S A. 101:360-365(2004)., "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons"
