ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-3596
source: miRBase, original name: rno-mir-3596a (MI0015465)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACTATACAACCTACTACCTCA miRNA* AGCTAGGAGGCTGTACAGTTAT mismatches: 6 bulges: 0 |
pre-miRNA
GTTGCTTTGTGCAAGTCCCAAGGAAAGCTAGGAGGCTGTACAGTTATCTCCCTTGTTGTAACTCTAAACTATACAACCTACTACCTCAGCCTGGGAGCAT
GCCGTCACAGTGGC
dot-bracket secondary structure
((..((.((.(((.((((((.((..((.(((.(((.((((.((((.....................)))).)))).))).))).))...))))))).).)
))...)).))..))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
GTTGCTTTGTGCAAGTCCCAAGGAAAGCTAGGAGGCTGTACAGTTATCTCCCTTGTTGTAACTCTAAACTATACAACCTACTACCTCAGCCTGGGAGCAT
GCCGTCACAGTGGC
dot-bracket secondary structure
((..((.((.(((.((((((.((..((.(((.(((.((((.((((.....................)))).)))).))).))).))...))))))).).)
))...)).))..))
SIMILARITIES| miRBase rno-let-7a-2: 2e-49 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 3e-29 |
Identical with: rno-let-7a-2 from miRBase (MNEST032639) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
