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Species belonging to selected taxon:
Mus musculus
,
Sus scrofa
,
Bos taurus
,
Rattus norvegicus
,
Gallus gallus
,
Canis lupus familiaris
,
Ovis aries
,
Macaca fascicularis
,
Anolis carolinensis
,
Trichosurus vulpecula
,
Papio anubis
,
Homo sapiens
,
Taeniopygia guttata
,
Peromyscus maniculatus bairdii
,
Pongo abelii
,
Ursus americanus
,
Equus caballus
,
Oryctolagus cuniculus
,
Macaca nemestrina
,
Cavia porcellus
,
Bos indicus
,
Meleagris gallopavo
,
Lonchura striata domestica
,
Bos sp.
,
Macropus eugenii
,
Peromyscus polionotus subgriseus
,
Capra hircus
,
Pan troglodytes verus
,
Macaca mulatta
ABOUT THIS RECORD
ID:
MNEST033954
species:
Sus scrofa
miRNA family:
mir-95
source:
miRBase, original name:
ssc-mir-95
(
MI0002436
)
Taxonomy by NCBI:
Sus scrofa
Sus
Suidae
Suina
Cetartiodactyla
Laurasiatheria
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCAACGGGTATTTATTGAGCA
miRNA*
CTCAATAAATGTTTGTTGAATT
mismatches:
3
bulges:
0
View larger
pre-miRNA
AACACAGTGGGCG
CTCAATAAATGTTTGTTGAATT
GAGATGCGTTAAA
TTCAACGGGTATTTATTGAGCA
CCCACTCTGTG
dot-bracket secondary structure
.(((.((((((.(
(((((((((((..(((((((((
...........))
)))))))..)))))))))))).
)))))).))).
SIMILARITIES
miRBase
cfa-mir-95
:
5e-36
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L,
BMC Genomics. 6:70(2005).
,
"Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing"
[
2
] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B,
Anim Genet. 41:159-168(2010).
,
"MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"