miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST008805
species: Taeniopygia guttata
miRNA family: miR-3195
source: miRNEST

Taxonomy by NCBI:
Taeniopygia guttata Taeniopygia Estrildinae Estrildidae Passeroidea Passeriformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGCGCCGGGCCCGGGGCTTCT

miRNA*
AAGCCCCCCTCCCCGGCGGCGCT

mismatches: 3
bulges: 2

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pre-miRNA
TGTGGCGTACAGAAGCCCCCCTCCCCGGCGGCGCTCTCGGGGGACCCAAGTCCTTGTGATCGAGGCCGCAGCCCGCGGACGGTGTGAGGCCGGTAGCGGC
CCCCCGGCGCGCCGGGCCCGGGGCTTCTCGGAGTCGG


dot-bracket secondary structure
..((((....(((((((((....(((((((.((((...(((((.((...(((((((....)))))((((.....)))).((((.....))))...)))))
)))).)))))))))))...)))))))))....)))).



SIMILARITIES
miRBase mmu-mir-5105: 0.000000000000002

PMRD no hits

microPC no hits
UniProt no hits

RFAM SSU_rRNA_eukarya: 3e-39
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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