miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Xenopus laevis, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum



ABOUT THIS RECORD

ID: MNEST006594
species: Xenopus laevis
miRNA family: miR-2444
source: miRNEST

Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGTGTTTTTTTTTGTTTCA

miRNA*
TAGTTATAATAAGGTTACAAAAC

mismatches: 5
bulges: 1

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pre-miRNA
GTGTAAGATAGCAGTGTAAGTAGGTTAAAATGCATTGTATAGCCAAGTGGTTTTGTGTTTTTTTTTGTTTCAGCCTCTTTTCGCAGGTCTAGGATTTTTG
TCAGAGCCCCTTTAGTTATAATAAGGTTACAAAACACTACATGGCCAAAGTATATTGACTGTCTTCTATTATAGGTCTGGTTA


dot-bracket secondary structure
.....((((...((((.(((..((((((.((((.(((....((((.(((((((((((..((((.((((...((.((((...((.(((((...))))).))
..))))...))......)))).)))).))))))..))))).))))))).)))).))))))..))).))))....)))).....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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