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Species belonging to selected taxon:
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST046130
species:
Saccharum officinarum
source:
microPC, original name:
miR319
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTCCT
miRNA*
GAGCTCCCTTCGATCCAATC
mismatches:
2
bulges:
0
View larger
pre-miRNA
AA
GAGCTCCCTTCGATCCAATC
CAGGAGGGGAAGTGGTCGGTTGCAGCTGCCGGTTCATGGATGCCTCTCTGGTGCAGCAATGACTAATGCTCACCTGCA
CTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCATCATCTTTCCCTCGTGC
TTGGATTGAAGGGAGCTCCT
dot-bracket secondary structure
..
((((((((((((((((((..
((.(((((((((((((.((((.((.((.((((.(((((.((((((....(((((((...((((....).))).)))))
)).....)))))).))))).)))).)).)))))).))))....))))))))).)).
))))))))))))))))))..
SIMILARITIES
miRBase
sof-MIR159c
:
4e-97
PMRD
sof-miR319b
:
4e-97
microPC
miR159
:
4e-97
UniProt
no hits
RFAM
MIR159: 2e-93
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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