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Species belonging to selected taxon:
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST054626
species:
Saccharum officinarum
source:
PMRD, original name:
sof-miR156h
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCAC
miRNA*
GCTTGCTGTCTGCATA
mismatches:
2
bulges:
4
View larger
pre-miRNA
GT
GCTTGCTGTCTGCATA
AGGTCCAGCGTCGTGTGCCACGCACCGGGCGGCGCCACGTGGTACCGGCCACCGCCAACGCCACTGTGGGGGTGCGGGCGCC
AGCTGCTGGCTGCCTGATCGGGCAGCGGGAGGGCGCAACCCGCCGCCGACGAAGAGGCAAAATGCTGGCCGGGCGCCGATGAGCGGTCCGACAAGTACTG
CCACGCGAGGAGTGAGGCGCGGTTCTCGGCGATAAGGTCGTCGAGCGCCGCGCTGGAGCGCGCGGAGATGTCCGGCGTCGTGACCAGCCAGGGAGCACCG
CTCGCCGCGCCGCCTCTGGCCGA
TGACAGAAGAGAGAGAGCAC
dot-bracket secondary structure
((
((((.((.(((((((.
.((.((((....(((((...))))).(((((((((...(((((...(((....)))...))))).((((((((((..(((((
.....((.(((((((....))))))).))..)))))..(((...(((........))).....(((((.(((((((((....(((((.(.....).))))
)..((((....((..((((((((.(((((((((...))))))))).))))))))...)).))))........))))))).)).)))))..))).))))).
))))).))))))))))))))).)
)).))))..))...))))))
SIMILARITIES
miRBase
zma-MIR156j
:
0.00002
PMRD
zma-miR156j
:
0.00002
microPC
no hits
UniProt
sp|Q01JD1|SPL7_ORYSI: 0.000000000000002
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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