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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042573
species: Sorghum bicolor
miRNA family: MIR395
source: miRBase, original name: sbi-MIR395d (MI0001536)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTGAAGTGTTTGGGGGAACTC

miRNA*
GTTCTCTGCAAACACTTCACAA

mismatches: 0
bulges: 1

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pre-miRNA
TCAAGTTTGGTGTCCCCAGGAGTTCTCTGCAAACACTTCACAAAGCACTTTTTTAGAGCTTTTGTGAAGTGTTTGGGGGAACTCTTGGTGCCACTGATCA
TTT


dot-bracket secondary structure
....(.(..(((.(.(((((((((((((.(((((((((((((((((.((.....)).)).)))))))))))))))))))))))))))).).)))..).).
...



SIMILARITIES
miRBase sbi-MIR395e: 4e-28

PMRD sbi-miR395d: 1e-49

microPC miR395: 0.000005
UniProt no hits

RFAM mir-395: 9e-42

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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