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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008494
species: Sorghum bicolor
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCACTGCCTCTTCCCTGGCT

miRNA*
 ACAGGGACGATGCAGAGCATG

mismatches: 4
bulges: 0
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pre-miRNA
 GTATAAACACAAACACAGATAAAGATGGTGGGTTTGATTGGAGACAGGGACGATGCAGAGCATGGGATGGGGCCATCAACAACAAAATTTCCAATTTCCG
TTTGCTTGCCCACAAAATGGAGGGACTTGTCAGGAGAGGTATCAAGCAGAGAGAAGGTGCCTCCCTGGTGAAATGGTGATGGCCTGAGAGAGCTCAGCTG
GTGTCCTGGTGTTGTTGCTTCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCACCGTCGACCTTGCCCATCATCATCATCATCTCTGT

dot-bracket secondary structure
............(((.((((...(((((((((((((((.((((.((((((.((.((((.(((.((((..(((((((((....((.....(((...(((((
(((...........))))))))))).((((((((.((((((((............))))))))))))))))..)).)))))))))..(.((((.((((.(
(...))....))))..)))).))))).))).)))).)).)))))).)))).....)))))....))))))))))......)))).)))


SIMILARITIES
miRBase sbi-MIR408: 2e-109

PMRD sbi-miR408: 2e-109

microPC miR408: 0.0002		UniProt no hits

RFAM MIR408: 0.00000000000002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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