miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008501
species: Sorghum bicolor
miRNA family: MIRf380
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACGACGACGACGACGTCGTCG

miRNA*
GCACGTCGTCGGTGTCCGTC

mismatches: 3
bulges: 1

View larger
pre-miRNA
GCGCCCGACTCCGAGGAGACGACGACGACGACGACGTCGTCGTCGGGAGGGACGACTTCTACCGGTGGGCCGCACCGGTGCACCATCTGCCGGAAGGGGT
TCGCCACGGGCCAGGCGCTCGGCGGCCACAAGCGCTGCCACTACTGGGACGGCACGTCGTCGGTGTCCGTCTCCATGTCGGCGTCGGCG


dot-bracket secondary structure
.((((.(((.(((((((((((..((((.(((((((((.((((((.(((((.....))))).((((((((((((.((((((.(((.(((...)))...)))
.))))..))))..)))....((((((.......)))))).)))))))))))))))))))))).)))))))))))...)))).)))))))



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|O22533|ZAT6_ARATH: 0.000002

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;